Some bizarre wording, but what I meant is better explained here:
With the first movie, Funimation first released Eva 1.01 which was the first DVD/Bluray release in Japan. However, it was not the definitive version. Gainax released Eva 1.11 which fixed some visual issues and had some extra scened added in. Funimation didn't release that until several months AFTER 1.01, even though 1.11 had already long since been released in Japan.
With the second movie, Gainax only released 2.22 on DVD/Bluray, which is what Funimation is going to release in the States.
Which makes everyone happy.