I think suikoden II is better than CT. 
Best jrpgs IMO:
Chronic trigger
Suikoden II
Dragon Quarter
Valkyrie Profile 2
Persona 3/4
Final Fantasy XII
Dragon Quest V

I'd take all over these over CT but CT is no slouch.
bolded and bumped this post because 
take a seat in the corner himu. In no universe, this one or any parallel one where you're a woman, is final fantasy XII better than any of those games much less chrono trigger
Suikoden II has a better story and characters than CT, and is one of my personal favorite jrpgs of all time.
Valkyrie Profile 2 is probably objectively, in terms of mechanics, the best jrpg I've played and makes Chrono Trigger look like a fucking text adventure novel.
Dragon Quarter is a hard and punishing as nails dungeon crawler which rewards risk and has more tension in its pinky finger than CT.
Final Fantasy XII has amazing sense of scale and exploration, amazing difficulty curve scale, fantastic boss fights, and rewards creativity by way of the gambit system.
I am positive you have not played Suiko II, VP2, and DQ.
Suck my cheeseburger nut.