No touch controls, no stupid CO powers, no CO tag powers, no little kids laughing and making jokes about being at war. The story is still pretty shit but it's not offensively stupid anymore. Plus there are new units that make sense and are useful (Bikes, Flares) instead of game breaking units (Black Boats).
I still won't forgive Nintendo for taking out the War Room and removing all statistics though. And I do miss the music but overall it's a better package.